In Gatan software, I found that the Band Pass Filter in Process Image can only be applied to a single 2D image or a specific frame of a 3D image. My dataset is a 3D stack (multiple frames), and I need to apply the Band Pass Filter to each frame automatically. Is there a recommended script or specific steps to automate this process for the entire 3D stack? bandpass filter I have tried applying the filter manually, but it is extremely inefficient.
In Gatan software, I found that the Band Pass Filter in Process Image can only be applied to a single 2D image or a specific frame of a 3D image. My dataset is a 3D stack (multiple frames), and I need to apply the Band Pass Filter to each frame automatically. Is there a recommended script or specific steps to automate this process for the entire 3D stack? bandpass filter I have tried applying the filter manually, but it is extremely inefficient.
Share Improve this question asked Mar 6 at 4:03 yale chenyale chen 333 bronze badges1 Answer
Reset to default 4Do something like this:
image img := getFrontImage()
number sx = img.ImageGetDimensionSize(0)
number sy = img.ImageGetDimensionSize(1)
number sz = img.ImageGetDimensionSize(2)
for(number i=0;i<sz;;i++){
image plane := img.slice2(0,0,i,0,sx,1,1,sy,1)
// Do change plane however you want, f.e.
plane = plane.IFMApplyFilter("Bandpass (default)")
}